Main Repositories

• GATK pipeline for Variant Discovery

  • A customised pipeline for generating variant calling format (VCF) files from raw sequencing (WGS, WES) FASTQ files for general variant discovery in humans.

• GWAS pipeline
  • Contains scripts to process genotyped data from microarray chips for a GWAS workflow.
• FluoreSense (MSc course project)

Side-projects

• Palm Oil Investigation

• Biodiversity Survey

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