Repositories - Scientific
- GATK pipeline for Variant Discovery - under development
- A customised pipeline for generating variant calling format (VCF) files from raw sequencing (WGS, WES) FASTQ files for general variant discovery in humans.
- The pipeline can be adapted for other organisms given some tweaks.
- GWAS pipeline
- Contains scripts to process genotyped data from microarray chips for a GWAS workflow.
- FluoreSense (MSc course project)